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Research PaperResearchia:202603.20018

Generative Replica-Exchange: A Flow-based Framework for Accelerating Replica Exchange Simulations

Shengjie Huang

Abstract

Replica exchange (REX) is one of the most widely used enhanced sampling methodologies, yet its efficiency is limited by the requirement for a large number of intermediate temperature replicas. Here we present Generative Replica Exchange (GREX), which integrates deep generative models into the REX framework to eliminate this temperature ladder. Drawing inspiration from reservoir replica exchange (res-REX), GREX utilizes trained normalizing flows to generate high-temperature configurations on dema...

Submitted: March 20, 2026Subjects: Biochemistry; Pharmaceutical Research

Description / Details

Replica exchange (REX) is one of the most widely used enhanced sampling methodologies, yet its efficiency is limited by the requirement for a large number of intermediate temperature replicas. Here we present Generative Replica Exchange (GREX), which integrates deep generative models into the REX framework to eliminate this temperature ladder. Drawing inspiration from reservoir replica exchange (res-REX), GREX utilizes trained normalizing flows to generate high-temperature configurations on demand and map them directly to the target distribution using the potential energy as a constraint, without requiring target-temperature training data. This approach reduces production simulations to a single replica at the target temperature while maintaining thermodynamic rigor through Metropolis exchange acceptance. We validate GREX on three benchmark systems of increasing complexity, highlighting its superior efficiency and practical applicability for molecular simulations.


Source: arXiv:2603.18076v1 - http://arxiv.org/abs/2603.18076v1 PDF: https://arxiv.org/pdf/2603.18076v1 Original Link: http://arxiv.org/abs/2603.18076v1

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Submission Info
Date:
Mar 20, 2026
Topic:
Pharmaceutical Research
Area:
Biochemistry
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